Publications citing EATRIS Q2 2021

EATRIS’ contribution to research findings

Here is a list of publications citing EATRIS from April to June 2021 (Q2)

Rapid Response: EU-PEARL: Co-production of knowledge to advance drug development. Re: Co-production of knowledge: the future

Authors: Cash-Gibson, L., Pericàs, J. M., van de Ketterij, E., Kalra, D, Patalano, F., & Genescà,
Year: 2021
Journal: British Medical Journal
DOI: https://doi.org/10.1136/bmj.n434

Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology

Authors: Deveson, IW;Gong, B;Lai, K;LoCoco, JS;Richmond, TA;Schageman, J;Zhang, Z;Novoradovskaya, N;Willey, JC;Jones, W;Kusko, R;Chen, G;Madala, BS;Blackburn, J;Stevanovski, I;Bhandari, A;Close, D;Conroy, J;Hubank, M;Marella, N;Mieczkowski, PA;Qiu, F;Sebra, R;Stetson, D;Sun, L;Szankasi, P;Tan, H;Tang, LY;Arib, H;Best, H;Burgher, B;Bushel, PR;Casey, F;Cawley, S;Chang, CJ;Choi, J;Dinis, J;Duncan, D;Eterovic, AK;Feng, L;Ghosal, A;Giorda, K;Glenn, S;Happe, S;Haseley, N;Horvath, K;Hung, LY;Jarosz, M;Kushwaha, G;Li, D;Li, QZ;Li, Z;Liu, LC;Liu, Z;Ma, C;Mason, CE;Megherbi, DB;Morrison, T;Pabón-Peña, C;Pirooznia, M;Proszek, PZ;Raymond, A;Rindler, P;Ringler, R;Scherer, A;Shaknovich, R;Shi, T;Smith, M;Song, P;Strahl, M;Thodima, VJ;Tom, N;Verma, S;Wang, J;Wu, L;Xiao, W;Xu, C;Yang, M;Zhang, G;Zhang, S;Zhang, Y;Shi, L;Tong, W;Johann, DJ;Mercer, TR;Xu, J;SEQC2 Oncopanel Sequencing Working Group;
Year: 2021
Journal: Nature biotechnology
DOI: 10.1038/s41587-021-00857-z

A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency

Authors: Jones, W;Gong, B;Novoradovskaya, N;Li, D;Kusko, R;Richmond, TA;Johann, DJ;Bisgin, H;Sahraeian, SME;Bushel, PR;Pirooznia, M;Wilkins, K;Chierici, M;Bao, W;Basehore, LS;Lucas, AB;Burgess, D;Butler, DJ;Cawley, S;Chang, CJ;Chen, G;Chen, T;Chen, YC;Craig, DJ;Del Pozo, A;Foox, J;Francescatto, M;Fu, Y;Furlanello, C;Giorda, K;Grist, KP;Guan, M;Hao, Y;Happe, S;Hariani, G;Haseley, N;Jasper, J;Jurman, G;Kreil, DP;Łabaj, P;Lai, K;Li, J;Li, QZ;Li, Y;Li, Z;Liu, Z;López, MS;Miclaus, K;Miller, R;Mittal, VK;Mohiyuddin, M;Pabón-Peña, C;Parsons, BL;Qiu, F;Scherer, A;Shi, T;Stiegelmeyer, S;Suo, C;Tom, N;Wang, D;Wen, Z;Wu, L;Xiao, W;Xu, C;Yu, Y;Zhang, J;Zhang, Y;Zhang, Z;Zheng, Y;Mason, CE;Willey, JC;Tong, W;Shi, L;Xu, J;
Year: 2021
Journal: Genome biology
DOI: 10.1186/s13059-021-02316-z

Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions

Authors: Gong, B;Li, D;Kusko, R;Novoradovskaya, N;Zhang, Y;Wang, S;Pabón-Peña, C;Zhang, Z;Lai, K;Cai, W;LoCoco, JS;Lader, E;Richmond, TA;Mittal, VK;Liu, LC;Johann, DJ;Willey, JC;Bushel, PR;Yu, Y;Xu, C;Chen, G;Burgess, D;Cawley, S;Giorda, K;Haseley, N;Qiu, F;Wilkins, K;Arib, H;Attwooll, C;Babson, K;Bao, L;Bao, W;Lucas, AB;Best, H;Bhandari, A;Bisgin, H;Blackburn, J;Blomquist, TM;Boardman, L;Burgher, B;Butler, DJ;Chang, CJ;Chaubey, A;Chen, T;Chierici, M;Chin, CR;Close, D;Conroy, J;Coleman, JC;Craig, DJ;Crawford, E;Del Pozo, A;Deveson, IW;Duncan, D;Eterovic, AK;Fan, X;Foox, J;Furlanello, C;Ghosal, A;Glenn, S;Guan, M;Haag, C;Hang, X;Happe, S;Hennigan, B;Hipp, J;Hong, H;Horvath, K;Hu, J;Hung, LY;Jarosz, M;Kerkhof, J;Kipp, B;Kreil, DP;Łabaj, P;Lapunzina, P;Li, P;Li, QZ;Li, W;Li, Z;Liang, Y;Liu, S;Liu, Z;Ma, C;Marella, N;Martín-Arenas, R;Megherbi, DB;Meng, Q;Mieczkowski, PA;Morrison, T;Muzny, D;Ning, B;Parsons, BL;Paweletz, CP;Pirooznia, M;Qu, W;Raymond, A;Rindler, P;Ringler, R;Sadikovic, B;Scherer, A;Schulze, E;Sebra, R;Shaknovich, R;Shi, Q;Shi, T;Silla-Castro, JC;Smith, M;López, MS;Song, P;Stetson, D;Strahl, M;Stuart, A;Supplee, J;Szankasi, P;Tan, H;Tang, LY;Tao, Y;Thakkar, S;Thierry-Mieg, D;Thierry-Mieg, J;Thodima, VJ;Thomas, D;Tichý, B;Tom, N;Garcia, EV;Verma, S;Walker, K;Wang, C;Wang, J;Wang, Y;Wen, Z;Wirta, V;Wu, L;Xiao, C;Xiao, W;Xu, S;Yang, M;Ying, J;Yip, SH;Zhang, G;Zhang, S;Zhao, M;Zheng, Y;Zhou, X;Mason, CE;Mercer, T;Tong, W;Shi, L;Jones, W;Xu, J;
Year: 2021
Journal: Genome biology
DOI: 10.1186/s13059-021-02315-0

Regulation of Fibroblast Activation Protein by Transforming Growth Factor Beta-1 in Glioblastoma Microenvironment

Authors: Krepela, E;Vanickova, Z;Hrabal, P;Zubal, M;Chmielova, B;Balaziova, E;Vymola, P;Matrasova, I;Busek, P;Sedo, A;
Year: 2021
Journal: International journal of molecular sciences
DOI: 10.3390/ijms22031046

Markers of lipid oxidation and inflammation in bronchial cells exposed to complete gasoline emissions and their organic extracts

Authors: Rossner, P;Cervena, T;Vojtisek-Lom, M;Neca, J;Ciganek, M;Vrbova, K;Ambroz, A;Novakova, Z;Elzeinova, F;Sima, M;Simova, Z;Holan, V;Beranek, V;Pechout, M;Macoun, D;Rossnerova, A;Topinka, J;
Year: 2021
Journal: Chemosphere
DOI: 10.1016/j.chemosphere.2021.130833

Immunoprotective neo-glycoproteins: Chemoenzymatic synthesis of multivalent glycomimetics for inhibition of cancer-related galectin-3

Authors: Heine, V;Hovorková, M;Vlachová, M;Filipová, M;Bumba, L;Janoušková, O;Hubálek, M;Cvačka, J;Petrásková, L;Pelantová, H;Křen, V;Elling, L;Bojarová, P;
Year: 2021
Journal: European journal of medicinal chemistry
DOI: 10.1016/j.ejmech.2021.113500

Discovery and Pharmacological Evaluation of STEAP4 as a Novel Target for HER2 Overexpressing Breast Cancer

Authors: Orfanou, IM;Argyros, O;Papapetropoulos, A;Tseleni-Balafouta, S;Vougas, K;Tamvakopoulos, C;
Year: 2021
Journal: Frontiers in oncology
DOI: 10.3389/fonc.2021.608201

Iron Complexes of Flavonoids-Antioxidant Capacity and Beyond

Authors: Nicolaides, NC;Ioannidi, MK;Koniari, E;Papageorgiou, I;Bartzeliotou, A;Sertedaki, A;Klapa, MI;Charmandari, E;
Year: 2021
Journal: International journal of molecular sciences
DOI: 10.3390/ijms22020646

Untargeted Plasma Metabolomics Unravels a Metabolic Signature for Tissue Sensitivity to Glucocorticoids in Healthy Subjects: Its Implications in Dietary Planning for a Healthy Lifestyle

Authors: Nicolaides, NC;Ioannidi, MK;Koniari, E;Papageorgiou, I;Bartzeliotou, A;Sertedaki, A;Klapa, MI;Charmandari, E;
Year: 2021
Journal: Nutrients
DOI: 10.3390/nu13062120

Almost half of the RTX domain is dispensable for complement receptor 3 binding and cell-invasive activity of the Bordetella adenylate cyclase toxin

Authors: Espinosa-Vinals, CA;Masin, J;Holubova, J;Stanek, O;Jurnecka, D;Osicka, R;Sebo, P;Bumba, L;
Year: 2021
Journal: The Journal of biological chemistry
DOI: 10.1016/j.jbc.2021.100833

Steroid Glycosides Hyrcanoside and Deglucohyrcanoside: On Isolation, Structural Identification, and Anticancer Activity

Authors: Rimpelová, S;Zimmermann, T;Drašar, PB;Dolenský, B;Bejček, J;Kmoníčková, E;Cihlářová, P;Gurská, S;Kuklíková, L;Hajdůch, M;Ruml, T;Opletal, L;Džubák, P;Jurášek, M;
Year: 2021
Journal: Foods (Basel, Switzerland)
DOI: 10.3390/foods10010136

Protective role of taurine against oxidative stress (Review)

Authors: Baliou, S;Adamaki, M;Ioannou, P;Pappa, A;Panayiotidis, MI;Spandidos, DA;Christodoulou, I;Kyriakopoulos, AM;Zoumpourlis, V;
Year: 2021
Journal: Molecular medicine reports
DOI: 10.3892/mmr.2021.12242

Synthesis and evaluation of the anticancer activity of some semisynthetic derivatives of rutaecarpine and evodiamine

Authors: Patrykei, S;Korobko, Y;Ogorodniichuk, O;Garazd, M;Polishchuk, P;Džubák, P;Gurská, S;Hajdúch, M;Lesyk, R;
Year: 2021
Journal: Synthetic Communications
DOI: 10.1080/00397911.2021.1919712

Preclinical evaluation of anti-VEGFR2 monoclonal antibody ramucirumab labelled with zirconium-89 for tumour imaging

Authors: Novy, Z;Janousek, J;Barta, P;Petrik, M;Hajduch, M;Trejtnar, F;
Year: 2021
Journal: Journal of labelled compounds & radiopharmaceuticals
DOI: 10.1002/jlcr.3909

Como a comunidade internacional da medicina de precisão tem se posicionado diante dos desafios impostos pela pandemia da COVID-19?

Authors: Silva, R;Iriart, J;
Year: 2021
Journal: Cadernos de Saúde Pública
DOI: 10.1590/0102-311×00296920

Ameliorative effect of taurine against diabetes and renal‑associated disorders (Review)

Authors: Baliou, S;Adamaki, M;Ioannou, P;Pappa, A;Panayiotidis, M;Christodoulou, I;Spandidos, D;Kyriakopoulos, A;Zoumpourlis, V;
Year: 2021
Journal: Medicine International
DOI: 10.3892/mi.2021.3

Deep oncopanel sequencing reveals fixation time- and within block position-dependent quality degradation in FFPE processed samples

Authors: Zhang, Y;Blomquist, T;Kusko, R;Stetson, D;Zhang, Z;Yin, L;Sebra, R;Gong, B;LoCoco, J;Mittal, V;Novoradovskaya, N;Yeo, J;Dominiak, N;Hipp, J;Raymond, A;Qiu, F;Arib, H;Smith, M;Brock, J;Farkas, D;Craig, D;Crawford, E;Li, D;Morrison, T;Tom, N;Xiao, W;Yang, M;Mason, C;Richmond, T;Jones, W;Johann, D;Shi, L;Tong, W;Willey, J;Xu, J;
Year: 2021
Archive: bioRxiv
DOI: 10.1101/2021.04.06.438687

The translational lag narrative in policy discourse in the United States and the European Union: a comparative study

Authors: Aarden, E;Marelli, L;Blasimme, A;
Year: 2021
Journal: Humanities and Social Sciences Communications
DOI: 10.1057/s41599-021-00777-y

Relatório de Estágio Estágio em Coordenação de Estudos Clínicos na CUF Academic Research Medical Center

Authors: Ferreira, SPG;
Year: 2021
Thesis

IIA SARYK UNIVERSITY

Authors: KRAFCIKOVA, M;
Year: 2021
Thesis

Nacionalni oblak za otvorenu znanost–EU perspektiva: NOSC model

Authors: Marić, I;
Year: 2021
Conference