EATRIS’ contribution to research findings

Here is a list of publications citing EATRIS from October to December (Q4) 2023

IRDiRC Drug Repurposing Guidebook: making better use of existing drugs to tackle rare diseases

Authors: Hechtelt Jonker, A;Day, S;Gabaldo, M;Stone, H;de Kort, M;O’Connor, DJ;Pasmooij, AMG;

Year: 2023

Journal: Nature reviews. Drug discovery

DOI: 10.1038/d41573-023-00168-9

Facilitating the use of the target product profile in academic research

Authors: Ibnidris, A;Streffer, J;Rea, M;Gold, M;Bot, S;Teipel, S;Gardiol, A;Boccardi, M;

Year: 2023

Journal: Alzheimer’s Dementia

DOI: 10.1002/alz.070964

“Be sustainable”: EOSC-Life recommendations for implementation of FAIR principles in life science data handling

Authors: David, R;Rybina, A;Burel, JM;Heriche, JK;Audergon, P;Boiten, JW;Coppens, F;Crockett, S;Exter, K;Fahrner, S;Fratelli, M;Goble, C;Gormanns, P;Grantner, T;Grüning, B;Gurwitz, KT;Hancock, JM;Harmse, H;Holub, P;Juty, N;Karnbach, G;Karoune, E;Keppler, A;Klemeier, J;Lancelotti, C;Legras, JL;Lister, AL;Longo, DL;Ludwig, R;Madon, B;Massimi, M;Matser, V;Matteoni, R;Mayrhofer, MT;Ohmann, C;Panagiotopoulou, M;Parkinson, H;Perseil, I;Pfander, C;Pieruschka, R;Raess, M;Rauber, A;Richard, AS;Romano, P;Rosato, A;Sánchez-Pla, A;Sansone, SA;Sarkans, U;Serrano-Solano, B;Tang, J;Tanoli, Z;Tedds, J;Wagener, H;Weise, M;Westerhoff, HV;Wittner, R;Ewbank, J;Blomberg, N;Gribbon, P;

Year: 2023

Journal: The EMBO journal

DOI: 10.15252/embj.2023115008

Unlocking hidden potential: advancements, approaches, and obstacles in repurposing drugs for cancer therapy

Authors: Weth, FR;Hoggarth, GB;Weth, AF;Paterson, E;White, MPJ;Tan, ST;Peng, L;Gray, C;

Year: 2023

Journal: British journal of cancer

DOI: 10.1038/s41416-023-02502-9

Integrative NGS testing reveals clonal dynamics of adverse genomic defects contributing to a natural progression in treatment-naïve CLL patients

Authors: Navrkalova, V;Plevova, K;Radova, L;Porc, J;Pal, K;Malcikova, J;Pavlova, S;Doubek, M;Panovska, A;Kotaskova, J;Pospisilova, S;

Year: 2023

Journal: British journal of haematology

DOI: 10.1111/bjh.19191

Radiotracer Development for Fungal-Specific Imaging: Past, Present, and Future

Authors: Lai, J;Wang, B;Petrik, M;Beziere, N;Hammoud, DA;

Year: 2023

Journal: The Journal of infectious diseases

DOI: 10.1093/infdis/jiad067

Successfully navigating the valley of death: the importance of accelerators to support academic drug discovery and development

Authors: Everts, M;Drew, M;

Year: 2023

Journal: Expert opinion on drug discovery

DOI: 10.1080/17460441.2023.2284824

Development of a novel in vitro cell model for evaluation of nanofiber mats immunogenicity

Authors: Zidar, A;Zupančič, Š;Kristl, J;Jeras, M;

Year: 2023

Journal: International journal of pharmaceutics

DOI: 10.1016/j.ijpharm.2023.123696

Validation of a SARS-CoV-2 Surrogate Neutralization Test Detecting Neutralizing Antibodies against the Major Variants of Concern

Authors: Santos da Silva, E;Servais, JY;Kohnen, M;Arendt, V;Staub, T;The Con-Vince Consortium, ;The CoVaLux Consortium, ;Krüger, R;Fagherazzi, G;Wilmes, P;Hübschen, JM;Ollert, M;Perez-Bercoff, D;Seguin-Devaux, C;

Year: 2023

Journal: International journal of molecular sciences

DOI: 10.3390/ijms241914965

89Zr-Trastuzumab PET/CT Imaging of HER2-Positive Breast Cancer for Predicting Pathological Complete Response after Neoadjuvant Systemic Therapy: A Feasibility Study

Authors: Linders, DGJ;Deken, MM;van Dam, MA;Wasser, MNJM;Voormolen, EMC;Kroep, JR;van Dongen, GAMS;Vugts, D;Oosterkamp, HM;Straver, ME;van de Velde, CJH;Cohen, D;Dibbets-Schneider, P;van Velden, FHP;Pereira Arias-Bouda, LM;Vahrmeijer, AL;Liefers, GJ;de Geus-Oei, LF;Hilling, DE;

Year: 2023

Journal: Cancers

DOI: 10.3390/cancers15204980

316 Inhibition of glutaminase 1 potentiates CFTR in vitro

Authors: Ji, X;Cui, G;McCarty, N;

Year: 2023

Journal: Journal of Cystic Fibrosis

DOI: 10.1016/S1569-1993(23)01243-2

315 Developing innovative high-throughput screening assays based on HiBiT-tagged CFTR for identification of CFTR modulators

Authors: Ondra, M;Lenart, L;Centorame, A;Dumut, D;De Sanctis, J;Radzioch, D;Hajduch, M;

Year: 2023

Journal: Journal of Cystic Fibrosis

DOI: 10.1016/S1569-1993(23)01242-0

DLL3 Is a Prognostic and Potentially Predictive Biomarker for Immunotherapy Linked to PD/PD-L Axis and NOTCH1 in Pancreatic Cancer

Authors: Lacalle-Gonzalez, C;Florez-Cespedes, M;Sanz-Criado, L;Ochieng’ Otieno, M;Ramos-Muñoz, E;Fernandez-Aceñero, MJ;Ortega-Medina, L;Garcia-Foncillas, J;Martinez-Useros, J;

Year: 2023

Journal: Biomedicines

DOI: 10.3390/biomedicines11102812

CRISPR/Cas9 bioluminescence-based assay for monitoring CFTR trafficking to the plasma membrane

Authors: Ondra, M;Lenart, L;Centorame, A;Dumut, DC;He, A;Zaidi, SSZ;Hanrahan, JW;De Sanctis, JB;Radzioch, D;Hajduch, M;

Year: 2024

Journal: Life science alliance

DOI: 10.26508/lsa.202302045

Transcriptomic alterations in the olfactory bulb induced by exposure to air pollution: Identification of potential biomarkers and insights into olfactory system function

Authors: Saveleva, L;Sima, M;Klema, J;Krejčík, Z;Vartiainen, P;Sitnikova, V;Belaya, I;Malm, T;Jalava, PI;Rössner, P;Kanninen, KM;

Year: 2023

Journal: Environmental toxicology and pharmacology

DOI: 10.1016/j.etap.2023.104316

Ten quick tips for building FAIR workflows

Authors: de Visser, C;Johansson, LF;Kulkarni, P;Mei, H;Neerincx, P;Joeri van der Velde, K;Horvatovich, P;van Gool, AJ;Swertz, MA;Hoen, PAC’;Niehues, A;

Year: 2023

Journal: PLoS computational biology

DOI: 10.1371/journal.pcbi.1011369

Age-related changes in sperm DNA methylation and their forensic and clinical implications

Authors: Kotková, L;Drábek, J;

Year: 2023

Journal: Epigenomics

DOI: 10.2217/epi-2023-0307

BMP2 gene transfer induces pericardial effusion and inflammatory response in the ischemic porcine myocardium

Authors: Pulkkinen, HH;Kivistö-Rahnasto, A;Korpela, H;Heikkilä, M;Järveläinen, N;Siimes, S;Kilpeläinen, L;Laham-Karam, N;Ylä-Herttuala, S;Laakkonen, JP;

Year: 2023

Journal: Frontiers in cardiovascular medicine

DOI: 10.3389/fcvm.2023.1279613

Clinical-genetic analysis of selected genes involved in the development of the human skeleton in 128 Czech patients with suspected congenital skeletal abnormalities

Authors: Spurná, Z;Čapková, P;Punová, L;DuchoslavovÁ, J;Aleksijevic, D;Venháčová, P;Srovnal, J;Štellmachová, J;Curtisová, V;Bitnerová, V;Petřková, J;Kolaříková, K;Janíková, M;Kratochvílová, R;Vrtěl, P;Vodička, R;Vrtěl, R;Zapletalová, J;

Year: 2024

Journal: Gene

DOI: 10.1016/j.gene.2023.147881

Synthesis and Biological Evaluation of Oxindole Sulfonamide Derivatives as Bruton’s Tyrosine Kinase Inhibitors

Authors: Koraboina, CP;Maddipati, VC;Annadurai, N;Gurská, S;Džubák, P;Hajdúch, M;Das, V;Gundla, R;

Year: 2024

Journal: ChemMedChem

DOI: 10.1002/cmdc.202300511

Design and Synthesis of Novel 2-Acetamido, 6-Carboxamide Substituted Benzothiazoles as Potential BRAFV600E Inhibitors – In vitro Evaluation of their Antiproliferative Activity

Authors: Batsi, Y;Antonopoulou, G;Fotopoulou, T;Koumaki, K;Kritsi, E;Potamitis, C;Goulielmaki, M;Skarmalioraki, S;Papalouka, C;Poulou-Sidiropoulou, E;Kosmidou, V;Douna, S;Vidali, MS;Gkotsi, EF;Chatziioannou, A;Souliotis, VL;Pletsa, V;Papadodima, O;Zoumpourlis, V;Georgiadis, P;Zervou, M;Pintzas, A;Kostas, ID;

Year: 2023

Journal: ChemMedChem

DOI: 10.1002/cmdc.202300322

Differential DNA damage response and cell fate in human lung cells after exposure to genotoxic compounds

Authors: Libalova, H;Zavodna, T;Margaryan, H;Elzeinova, F;Milcova, A;Vrbova, K;Barosova, H;Cervena, T;Topinka, J;Rössner, P;

Year: 2024

Journal: Toxicology in vitro : an international journal published in association with BIBRA

DOI: 10.1016/j.tiv.2023.105710

Knowledge‐based representation: Patient engagement in drug development

Authors: Egher, C;Zvonareva, O;

Year: 2024

Journal: Health Expectations

DOI: 10.1111/hex.13912

A unique case of AH-dominant type nodular pulmonary amyloidosis presenting as a spontaneous pneumothorax: a case report and review of the literature

Authors: Skopelidou, V;Hurník, P;Tulinský, L;Židlík, V;Lenz, J;Delongová, P;Hornychová, H;Flodr, P;Jelínek, T;Muroňová, L;Holub, D;Džubák, P;Hajdúch, M;

Year: 2023

Journal: Pathology oncology research : POR

DOI: 10.3389/pore.2023.1611390

P64 An activin type II receptor ligand trap prevented loss of cortical bone strength and cancellous bone mass in a mouse model of severe disuse osteopenia

Authors: Poulsen, M;Fisher, F;Lachey, J;Seehra, J;Andersen, C;Eijken, M;Thomsen, J;Brüel, A;Lodberg, A;

Year: 2023

Journal: Neuromuscular Disorders

DOI: 10.1016/j.nmd.2023.07.045

P63 PCSK9 inhibitor is available for muscular disease patients without muscular adverse events

Authors: Kurashige, T;Murao, T;Katsumata, R;Kanaya, Y;Dodo, Y;Sugiura, T;Ohshita, T;

Year: 2023

Journal: Neuromuscular Disorders

DOI: 10.1016/j.nmd.2023.07.044

P62 SIMPATHIC: accelerating drug repurposing for rare neurological, neurometabolic and neuromuscular disorders by exploiting SIMilarities in clinical and molecular PATHology

Authors: ‘t Hoen, P;Benkemoun, L;Prigione, A;Boussaad, I;de Kort, M;Geille, A;Lochmüller, H;Voermans, N;van Engelen, B;van Karnebeek, C;

Year: 2023

Journal: Neuromuscular Disorders

DOI: 10.1016/j.nmd.2023.07.043

P61 High dose localized muscle irradiation: Hedgehog pathway as a new therapeutic target

Authors: Graziosi, E;François, S;Pâteux, J;Gauthier, M;Drouet, M;Riccobono, D;Jullien, N;

Year: 2023

Journal: Neuromuscular Disorders

DOI: 10.1016/j.nmd.2023.07.042

P60 Developing a decision-making framework for expanded access to gene therapy in rare neuromuscular diseases

Authors: Lawrence, C;

Year: 2023

Journal: Neuromuscular Disorders

DOI: 10.1016/j.nmd.2023.07.041

Synthesis and Biological Profiling of Benzofuro‐Fused 7‐Deazapurine Nucleosides

Authors: Yang, C;Tichý, M;Poštová Slavětínská, L;Vaiedelich, E;Gurská, S;Džubák, P;Hajdúch, M;Hocek, M;

Year: 2023

Journal: European Journal of Organic Chemistry

DOI: 10.1002/ejoc.202300723

One‐Pot/Simultaneous Synthesis of PHPMA‐G‐PLA Copolymers via Metal‐Free Rop/Raft Polymerization and their Self‐Assembly from Micelles to Thermoresponsive Vesicles

Authors: Lukáš Petrova, S;Sincari, V;Konefał, R;Pavlova, E;Lobaz, V;Kočková, O;Hrubý, M;

Year: 2023

Journal: Macromolecular Chemistry and Physics

DOI: 10.1002/macp.202300271

A Fast HPLC/UV Method for Determination of Ketoprofen in Cellular Media

Authors: Vozniuk, O;Kejík, Z;Veselá, K;Skaličková, M;Novotný, P;Hromádka, R;Hajduch, J;Martásek, P;Jakubek, M;

Year: 2023

Journal: ChemistryOpen

DOI: 10.1002/open.202300147

Synthesis, Antimalarial, Antileishmanial, and Cytotoxicity Activities and Preliminary In Silico ADMET Studies of 2-(7-Chloroquinolin-4-ylamino)ethyl Benzoate Derivatives

Authors: Gutiérrez, JE;Ramírez, H;Fernandez-Moreira, E;Acosta, ME;Mijares, MR;De Sanctis, JB;Gurská, S;Džubák, P;Hajdúch, M;Labrador-Fagúndez, L;Stella, BG;Díaz-Pérez, LJ;Benaim, G;Charris, JE;

Year: 2023

Journal: Pharmaceuticals (Basel, Switzerland)

DOI: 10.3390/ph16121709

The IRDiRC Drug Repurposing Guidebook: Creating an efficient and visible pathway for rare diseases

Authors: Hechtelt Jonker, A;O’Connor, D;Gabaldo, M;Day, S;de Kort, M;Stone, H;Gerdina Pasmooij, A;

Year: 2023

The IRDiRC Drug Repurposing Guidebook: Creating an efficient and visible pathway for rare diseases

DOI: 10.58647/rexpo.23004

Label extensions: Benefits and challenges for drug repurposing

Authors: Lo, D;

Year: 2023

Label extensions: Benefits and challenges for drug repurposing

DOI: 10.58647/rexpo.23000020.v1

The Genotoxicity of Organic Extracts from Particulate Emissions Produced by Neat Gasoline (E0) and a Gasoline-Ethanol Blend (E15) in BEAS-2B Cells

Authors: Libalova, H;Zavodna, T;Elzeinova, F;Barosova, H;Cervena, T;Milcova, A;Vankova, J;Paradeisi, F;Vojtisek-Lom, M;Sikorova, J;Topinka, J;Rossner, P;

Year: 2023

Journal: Journal of Xenobiotics

DOI: 10.3390/jox14010001

Geneesmiddelen voor Geavanceerde Therapie (ATMP’s) in Nederland: Veldverkenning, Knelpuntanalyse en Activiteitenkaart

Authors: Gort, J;van Hattem, C;Bloem, L;ten Ham, R;

Year: 2023

Utrecht University

DOI: 10.33540/1874/433501

Novel 5-Substituted Oxindoles Derivatives as Bruton’s Tyrosine Kinase Inhibitors: Design, Synthesis, Docking, Molecular Dynamic Simulation, and Biological Evaluation

Authors: Velavalapalli, V;Maddipati, V;Gurská, S;Annadurai, N;Lišková, B;Katari, N;Džubák, P;Hajdúch, M;Das, V;Gundla, R;

Year: 2023

ChemRxiv Back toBiological and Medicinal Chemistry

DOI: 10.26434/chemrxiv-2023-jhbh4

Charge regulation triggers condensation of short oligopeptides to polyelectrolytes

Authors: Pineda, S;Staňo, R;Murmiliuk, A;Blanco, P;Montes, P;Tošner, Z;Groborz, O;Pánek, J;Hrubý, M;Štepánek, M;Kosovan, P;

Year: 2023

ChemRxiv Back to Physical Chemistry

DOI: 10.26434/chemrxiv-2023-8s081

Developing Generic Templates to Shape the Future for Conducting Integrated Research Platform Trials

Authors: Mesenbrink, P;Gidh-Jain, M;Parke, T;Koenig, F;Spiertz, C;

Year: 2023

Journal: Research Square

DOI: 10.21203/rs.3.rs-3382348/v1

It is time we got more personal with advanced therapies- How do we create the right ecosystem for more effective ATMP development in Europe?

Authors: Oldoni, E;Ussi, A;Andreu, A;Morrow, D;

Year: 2023

Medical Research Archives

DOI: 10.18103/mra.v11i9.4322

Potential business model for a European vaccine R&D infrastructure and its estimated socio-economic impact

Authors: Jungbluth, S;Martin, W;Slezak, M;Depraetere, H;Guzman, C;Ussi, A;Morrow, D;Van Heuverswyn, F;Arnouts, S;Carrondo, M;Olesen, O;Ottenhoff, T;Dockrell, H;Ho, M;Dobly, A;Christensen, D;Segalés, J;Laurent, F;Lantier, F;Stockhofe-Zurwieden, N;Morelli, F;Langermans, J;Verreck, F;Le Grand, R;Sloots, A;Medaglini, D;Lawrenz, M;Collin, N;

Year: 2023

F1000Research

DOI: 10.12688/f1000research.141399.1

Multi-omics Quality Assessment in Personalized Medicine through EATRIS

Authors: EATRIS Plus Multi-omics working group and stakeholders (in alphabetical order by last name), ;Alonso-Andrés, P;Baldazzi, D;Chen, Q;Conde Moreno, E;Crespo-Toro, L;Donner, K;Džubák, P;Ekberg, S;Garcia-Bermejo, M;Gasparotto, D;Ghimire, B;Gloerich, J;Habier, J;Hajdúch, M;Halder, R;Hannula, S;Lindgren, H;Liu, Y;Maestro, R;Martin, T;Mattila, P;Najdekr, L;Nazir, K;Niehues, A;Nieminen, A;Nordlund, J;Oldoni, E;Övernäs, E;Palva, A;Puhka, M;Quintero, I;Ramos-Muñoz, M;Rodríguez-Serrano, E;Saracino, S;Scherer, A;Shi, L;Stanková, J;’t Hoen, P;Tunstall, T;Valenti, B;van Gool, A;Weiss, M;Yadav, B;Zheng, Y;Žižkovičová, P;

Year: 2023

bioRxiv

DOI: 10.1101/2023.10.25.563912

Direct mailing of HPV self-sampling kits to older women non-participating in cervical screening in the Czech Republic

Authors: Ngo, O;Chloupková, R;Cibula, D;Sláma, J;Mandelová, L;Hejduk, K;Hajdúch, M;Minka, P;Koudeláková, V;Jaworek, H;Trnková, M;Vaněk, P;Dvořák, V;Dušek, L;Májek, O;

Year: 2023

medRxiv

DOI: 10.1101/2023.10.05.23296387

Network-based integrative multi-omics approach reveals biosignatures specific to COVID-19 disease phases

Authors: Agamah, F;Ederveen, T;Skelton, M;Martin, D;Chimusa, E;’t Hoen, P;

Year: 2023

bioRxiv

DOI: 10.1101/2023.09.29.560110

The value of humanities research

Author: Dukes, A;

Year: 2023

F1000Research

DOI: 10.7490/f1000research.1119662.1

Mobile equipment for processing fruit and vegetables using PEF

Authors: Houška, M;Kovařikova, E;Novotna, P;

Year: 2023

Conference

EuroGCT D4-1: Landscape mapping, report on mapping of European cell and gene therapy landscape at multiple levels

Author: Mahalatchimy, A;Kuo, HY;Gilbert, LS;Delage, A;

Year: 2023

Conference

EuroGCT Deliverable D4. 7: Information collation, report on collation of existing information and links on where to seek information and guidance-Version 2.0

Authors: Kuo, HY;Gilbert, LS;Delage, A;Couturier, A;

Year: 2023

Conference

Collaborations Science-Industrie pour la transformation industrielle en Afrique : mesures, développements, enseignements et perspectives pour des dynamiques cocréatrices de croissance durable dans les économies Africaines

Author: Dosso, M;

Year: 2023

Conference

TRUSTroke meeting at CERN, 27-28 September 2023

Author: Lapka, M;

Year: 2023

Thesis

Aktivnosti Hrvatskog društva za medicinsku informatiku od listopada 2021. godine do studenog 2022. godine

Author: Erceg, M;

Year: 2023

Bilt. Hrvat. druš. med. inform.

 

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